PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G141700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 248aa    MW: 29002.1 Da    PI: 6.2657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G141700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-1257100755
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           Er RR+++ +++  Lre +Pk +      Kl+Ka++ + A++YI++Lq
  Potri.018G141700.1  57 VSERSRRQKLSDKLLALREAVPKiS------KLDKASVIKDAIKYIQDLQ 100
                         57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6975099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1552118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.93E-1053104No hitNo description
SMARTSM003532.0E-1256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1556116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-957100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEIIDNHFEY QNYWETNRFW NEDLDYSWEM NQQFNVGYYD SSSLDGNTQT IASKNIVSER  60
SRRQKLSDKL LALREAVPKI SKLDKASVIK DAIKYIQDLQ EQERRLQADI RELESRRLEK  120
NHTFDIEDEL PVLLRSKRTR HDQIYDHWLA RSTCPIQVHE LSVTSMGEKT LFVSLTCSKT  180
TDAMIRICEA FEPLKLKIIT ANITTLSGMI KKTVLIEVDE EEKEHLKIKI ERAVLALRSA  240
YNPMMSI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G141700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ3631860.0KJ363186.1 Populus euphratica bHLH35 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445770.10.0transcription factor bHLH35
SwissprotQ2HIV94e-71BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A3N7GA770.0A0A3N7GA77_POPTR; Uncharacterized protein
STRINGPOPTR_0018s13850.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-66bHLH family protein