PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G141800.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 176aa    MW: 20376.9 Da    PI: 4.9695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G141800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-135599554
                        HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +   Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Potri.018G141800.2 55 NIVSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99
                        5567*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.4945099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1851114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-1453104No hitNo description
SMARTSM003531.8E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1756115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEPIENIGEE YQNYWETKMF LQNEELDSWA IDEAFSGYYD SSSPDGAASS AATKNIVSER  60
NRRKKLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH DQEKQIQAEL SELESGKSKK  120
NQGGFGVYYH QELPVLLRSK KKKIDYQFCD FGGSKISPIE LLEVWLLTWE RIHYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1455109963Transcription factor MYC2
5gnj_B4e-1455109963Transcription factor MYC2
5gnj_E4e-1455109963Transcription factor MYC2
5gnj_F4e-1455109963Transcription factor MYC2
5gnj_G4e-1455109963Transcription factor MYC2
5gnj_I4e-1455109963Transcription factor MYC2
5gnj_M4e-1455109963Transcription factor MYC2
5gnj_N4e-1455109963Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G141800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325261.21e-117transcription factor bHLH35
SwissprotQ700E32e-51BH027_ARATH; Transcription factor bHLH27
TrEMBLB9IN671e-116B9IN67_POPTR; BHLH family protein
STRINGcassava4.1_015716m3e-91(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.46e-46bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]