PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G141800.3
Common NamePOPTR_0018s13860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 168aa    MW: 18771.8 Da    PI: 5.3766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G141800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000462173954
                        TCHHHHHHHHHHHHHH CS
                 HLH 39 sKaeiLekAveYIksL 54
                        +Ka+i + A++YI++L
  Potri.018G141800.3  2 DKASIIKDAIDYIQEL 17
                        8*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-5133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-6133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.626117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.38E-589155No hitNo description
Gene3DG3DSA:3.30.70.2604.8E-490155No hitNo description
CDDcd048731.52E-492155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDKASIIKDA IDYIQELHDQ EKQIQAELSE LESGKSKKNQ GGFGVYYHQE LPVLLRSKKK  60
KIDYQFCDFG GSKISPIELL ELRVAYMGEN TLLVSLTCNK RTDTMVKLCE VFESLGLKII  120
TANITTVSGR VLKTVFIEAD EEEKDKLKIR IEAAIAALND PPSPMSM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G141800.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2271633e-69CU227163.1 Populus EST from severe drought-stressed leaves.
GenBankCU2286163e-69CU228616.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325261.21e-119transcription factor bHLH35
SwissprotQ2HIV99e-52BH035_ARATH; Transcription factor bHLH35
TrEMBLB9IN671e-118B9IN67_POPTR; BHLH family protein
STRINGXP_008223870.15e-83(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-54bHLH family protein