PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G141800.4
Common NamePOPTR_0018s13860g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 228aa    MW: 25908.7 Da    PI: 7.3395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G141800.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-135699654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Potri.018G141800.4 56 IVSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99
                        567*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.4945099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1851114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-1353104No hitNo description
SMARTSM003531.8E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1756115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEPIENIGEE YQNYWETKMF LQNEELDSWA IDEAFSGYYD SSSPDGAASS AATKNIVSER  60
NRRKKLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH DQEKQIQAEL SELESGKSKK  120
NQGGFGVYYH QELPVLLRSK KKKIDYQFCD FGGSKISPIE LLELRVAYMG ENTLLVSLTC  180
NKRTDTMVKL CEVFESLGLK IITANITTVS GRVLKTVFIE MKKRKIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-145599953Transcription factor MYC2
5gnj_B7e-145599953Transcription factor MYC2
5gnj_E7e-145599953Transcription factor MYC2
5gnj_F7e-145599953Transcription factor MYC2
5gnj_G7e-145599953Transcription factor MYC2
5gnj_I7e-145599953Transcription factor MYC2
5gnj_M7e-145599953Transcription factor MYC2
5gnj_N7e-145599953Transcription factor MYC2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G141800.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2271637e-31CU227163.1 Populus EST from severe drought-stressed leaves.
GenBankCU2286167e-31CU228616.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325261.21e-163transcription factor bHLH35
SwissprotQ2HIV97e-85BH035_ARATH; Transcription factor bHLH35
TrEMBLB9IN671e-162B9IN67_POPTR; BHLH family protein
STRINGcassava4.1_015716m1e-130(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-77bHLH family protein