PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G145800.1
Common NamePOPTR_0018s14300g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 1118aa    MW: 123969 Da    PI: 6.7457
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G145800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.6e-23134235199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F+  
  Potri.018G145800.1 134 FCKTLTASDTSTHGGFSVPRRAAEKTfppldfSMQPPA-QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFM-- 221
                         99*********************999*****9445444.38************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Potri.018G145800.1 222 RDEKQQLLLGIRRA 235
                         5688889****997 PP
2Auxin_resp115.93.6e-38260343183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr +Gt++g+sdld vrW+nS+Wr+L+
  Potri.018G145800.1 260 AAHAAANNSPFTVYYNPRASPSEFVIPLAKYYKAVYsNQISLGMRFRMMFETEESGTRRHMGTITGISDLDAVRWKNSQWRNLQ 343
                         79********************************9989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-43123263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-41125249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.72E-18133225No hitNo description
SMARTSM010191.1E-22134236IPR003340B3 DNA binding domain
PROSITE profilePS5086312.125134236IPR003340B3 DNA binding domain
PfamPF023625.2E-21134235IPR003340B3 DNA binding domain
PfamPF065076.2E-34260343IPR010525Auxin response factor
PfamPF023091.5E-710021090IPR033389AUX/IAA domain
PROSITE profilePS5174527.96610051089IPR000270PB1 domain
SuperFamilySSF542778.53E-710181083No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MRILKGNLLT NECVTRGDDA GVEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASLKKDVNA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YVQMTLQPVS SFDKDALLRS  120
DLALKSNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKTF PPLDFSMQPP AQELVARDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF MRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVYYNPRASP SEFVIPLAKY YKAVYSNQIS  300
LGMRFRMMFE TEESGTRRHM GTITGISDLD AVRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPPPFFRS KHPRQPGMPD DDSTDFDSLF KRTMPWLGDD IYMKDPQVLP  420
GLSLAQRMNM QQNPSLANSM QPNYMQSLSG SVLQNLPGGD LSRQLGLSSP QMPQPNNLQF  480
NAQRLPQQAQ QLDQLPKLQS LLNPLGSIIQ SQQQMGDITQ QSRQNMMAQT LPSSQVQAQL  540
LQPQTLAQTN NILQQQPSIQ SHQLLRNLPQ TLHQQQQNQQ QHIMGQNQQQ SLMQSQLSDQ  600
VNQHMQMSDN QIQSQLMQKL QQQQQSVSAQ QSAMHQAGQL GQLQDSQRQL LDASQSFSRS  660
MTPSQMLEIP QTTPTSLPQP NTIPQQMTKN NNQTNTRFSH LPQQLKPQQQ HSGIMLLSEM  720
AGHMGLPPSS MANQLSTAGS SILTAAAGPG QSGITDDVPS CSTSPSTNNC PNIVQPMING  780
WAHRSTAMGE DMAQSAVTLF SPSALETVSS NGNLVKDLLQ KSEVKPSLNI SKNQNPGLFS  840
SQTYLNGVAA QIDYLDTSSS TTSVCLSQND VHLQQNNNSL SYNPQSVLLR DASHDGELQG  900
DPRNNILYGT NIDSQLVMPI NSDHLLTKGM MGLGKDFSNN FSSGGMLTNC ENSKDPQQEL  960
SSAIVSKSFG VPDMPFNSID STINDSSLLN RGSWAPPQQQ FQRMRTYTKV YKRGAVGRSI  1020
DITRYSGYDE LKQDLARRFG IEGQLEDQQR IGWKLVYTDH ENDVLLVGDD PWEEFVNCVR  1080
CIKILSPQEV QQMSLDGDFG NSVLPNQAGS SSDNVNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691836442388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G145800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372205.10.0auxin response factor 19
TrEMBLA0A1L6K5X90.0A0A1L6K5X9_POPTO; Auxin response factor
STRINGPOPTR_0018s14300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19