PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.019G006600.1

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 194aa MW: 21538.4 Da PI: 4.6658

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.019G006600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59	1.2e-18	42	93	1	52
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCke 52 rW+kqe+laL+e+r++m+ ++r++ k+plWeevs+k+ e g++rs+k+C+e Potri.019G006600.1 42 RWPKQETLALLEIRSDMDVAFRDSVVKAPLWEEVSRKLNELGYNRSAKKCQE 93 8*************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	3.00E-19	41	93	No hit	No description
Pfam	PF13837	8.9E-11	41	93	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MEASTTFLEN SSAAAGDWED EEGDEGMRVQ AEEGVQCSTA NRWPKQETLA LLEIRSDMDV 60 AFRDSVVKAP LWEEVSRKLN ELGYNRSAKK CQENKGIVAI DPSSMEIMES LDNEFLSTAK 120 LSLPYSEMPP ILKLGRKMLS TSVPQARHLC VTFLILESFT AANWCCRGDH GREKWTLLLK 180 GVCEGQSSDS AKR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.019G006600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC211306	1e-126	AC211306.1 Populus trichocarpa clone POP004-K18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1WMP1	1e-140	A0A2K1WMP1_POPTR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	3e-23	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Potri.019G006600.1