PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.019G021400.1

Common Name

POPTR_0019s03790g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ZF-HD

Protein Properties

Length: 133aa MW: 14827.7 Da PI: 8.7337

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.019G021400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	91.7	6.5e-29	19	72	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++Y+eC +NhA+ +GghavDGCgEf+p+ g++gt++a+ C ACgCHRnFHR++v Potri.019G021400.1 19 AEYRECWRNHAILTGGHAVDGCGEFTPN-GDQGTKEAFICEACGCHRNFHRKQVI 72 58***********************8.9999*****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.2E-27	20	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.2E-25	20	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-16	21	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.589	21	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MANSDSKSKP LNEESRIIAE YRECWRNHAI LTGGHAVDGC GEFTPNGDQG TKEAFICEAC 60 GCHRNFHRKQ VIMRDGTILL DTHHSPPPPY ELYGAPYTSV SDEESLYNGS SSEKKMKARK 120 RPKRGTAMRN KK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.019G021400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002325346.1	7e-97	zinc-finger homeodomain protein 2
TrEMBL	B9IPC1	2e-95	B9IPC1_POPTR; Uncharacterized protein
STRING	POPTR_0019s03790.1	3e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17111	6	8
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	7e-24	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Potri.019G021400.1
Entrez Gene	7487193