PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G031400.1
Common NamePOPTR_0019s04690g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 368aa    MW: 41019.3 Da    PI: 8.2017
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G031400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.4e-5381441128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+ +yL+kkv+++++++ ++i++vdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk 
  Potri.019G031400.1   8 LPPGFRFHPTDEELILHYLRKKVASTPFPV-SIIADVDIYKFDPWDLPAKAALGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKV 97 
                         79****************************.89***************988899************************************* PP

                 NAM  92 vlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++          ++e+vg+kk Lvfykg+ pkg+ktdW+mheyrl
  Potri.019G031400.1  98 IMAStitpggviiqGQENVGVKKALVFYKGKPPKGVKTDWIMHEYRL 144
                         ***999999999988888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-645176IPR003441NAC domain
PROSITE profilePS5100561.6378176IPR003441NAC domain
PfamPF023651.7E-279144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MKNQQSSLPP GFRFHPTDEE LILHYLRKKV ASTPFPVSII ADVDIYKFDP WDLPAKAALG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKVIMA STITPGGVII QGQENVGVKK  120
ALVFYKGKPP KGVKTDWIMH EYRLADTSSY SYNKPMKPRD SSMRLDDWVL CRIYKKAHAL  180
TSCARAEMSS EHEQEEEEEH FVPENPLPSL KGPISNKSAL MSQKSCSFSN LLDAMDYSLL  240
SSLLADTQFN PTGFESNPAL NSTASQLDQP PFFSNSNIAG GGGGGCFLQK LPQLSASAPN  300
NVDNKLKRQL SHIDEDMLHP SKKFMNSCSF TNTNNISTQT DNGQYNFLSQ PFLNQQFLLS  360
PHLQFQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-72517614165NO APICAL MERISTEM PROTEIN
1ut4_B3e-72517614165NO APICAL MERISTEM PROTEIN
1ut7_A3e-72517614165NO APICAL MERISTEM PROTEIN
1ut7_B3e-72517614165NO APICAL MERISTEM PROTEIN
3swm_A3e-72517617168NAC domain-containing protein 19
3swm_B3e-72517617168NAC domain-containing protein 19
3swm_C3e-72517617168NAC domain-containing protein 19
3swm_D3e-72517617168NAC domain-containing protein 19
3swp_A3e-72517617168NAC domain-containing protein 19
3swp_B3e-72517617168NAC domain-containing protein 19
3swp_C3e-72517617168NAC domain-containing protein 19
3swp_D3e-72517617168NAC domain-containing protein 19
4dul_A3e-72517614165NAC domain-containing protein 19
4dul_B3e-72517614165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G031400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325400.10.0NAC transcription factor 47
SwissprotQ84TD61e-116NAC47_ARATH; NAC transcription factor 47
TrEMBLB9IPL80.0B9IPL8_POPTR; Uncharacterized protein
STRINGPOPTR_0019s04690.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-114NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]