PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G034700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 243aa    MW: 27263.9 Da    PI: 6.6329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G034700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-0967116455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           +  E++RR+++++ +++L +llP      + +K    +   +A+ YIk L+
  Potri.019G034700.1  67 ERKVSEKNRRNQMKTLYSKLNSLLPDkE---STEKQPLPDQIDEAISYIKTLE 116
                         56789*********************55...9999***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1163130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.64963115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.12E-565112No hitNo description
Gene3DG3DSA:4.10.280.104.2E-1065130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-668116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-469121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTSAHFILLT FRSLFRWCVY KDLSSKWTCH LHTSVLRFPG GFMIASSGGT IMESSSGRSN  60
LSSTKTERKV SEKNRRNQMK TLYSKLNSLL PDKESTEKQP LPDQIDEAIS YIKTLEEKLE  120
KTKEKKESLT FATSKSPKLK IQETGSALEI VFTSGLDNQF LFYEIISILH EEGVEVVSAN  180
SQALGDSFFH VVHAQMKESA DGLGAARVTG RLNRLINGST CEIELDSELW DFVNHPETNL  240
EF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G034700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325417.21e-144transcription factor bHLH162
TrEMBLA0A3N7HBZ21e-142A0A3N7HBZ2_POPTR; Uncharacterized protein
STRINGPOPTR_0019s05030.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-29bHLH family protein