PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G053200.1
Common NamePOPTR_0019s08030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 413aa    MW: 45182.2 Da    PI: 8.9579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G053200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.82.7e-112147127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  Potri.019G053200.1 21 PGEPDCSYYIRTGLCRFGPTCRFNHPP 47
                        5789*********************97 PP
2zf-CCCH38.91.4e-126892327
                        S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                        +++C+++++tGtCk+G++CkF+H++
  Potri.019G053200.1 68 QPECQYYLKTGTCKFGATCKFHHPR 92
                        799********************96 PP
3zf-CCCH33.66.5e-11116138527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C +++rtG+Ck+G++CkF+H++
  Potri.019G053200.1 116 ECAYYLRTGQCKFGSTCKFHHPQ 138
                         5********************97 PP
4zf-CCCH382.8e-12273299127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f+++tG Ck+G+ C+F+H++
  Potri.019G053200.1 273 PGQPECQFYMKTGDCKFGAVCRFHHPR 299
                         5789*********************96 PP
5zf-CCCH40.45e-13319345127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF+H++
  Potri.019G053200.1 319 PGEPLCIFYSRYGICKFGPSCKFHHPM 345
                         589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.842048IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-52047IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-82247IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-52548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-42646IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1596593IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-66592IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-106892IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-66994IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-57192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6111139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568111139IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4111138IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-9116138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4117137IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6272299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596272300IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9274299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.68E-6276302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5278300IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7318345IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784318346IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10320345IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6321345IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4323343IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MWQMNLRSSE TMEAGPYPER PGEPDCSYYI RTGLCRFGPT CRFNHPPNRK LAIAAARMKG  60
EFPERIGQPE CQYYLKTGTC KFGATCKFHH PRDKAGVSGR VSLNILGYPL RLNEMECAYY  120
LRTGQCKFGS TCKFHHPQPA NVMVPLRGSP VYPTVNSPTT PGQQSYPGGL ATNWSRASFI  180
TSPRWQAPSN YTPLILPQGV VSVPGWNAYS GQVGSVSSPE SQQQTGNSQI YGTSRQNESV  240
NAGSQGTFSP YRSDSVPMGF YALQRESVFP ERPGQPECQF YMKTGDCKFG AVCRFHHPRE  300
RLIPAPDCVL SAIGLPLRPG EPLCIFYSRY GICKFGPSCK FHHPMGIFTY NLTASSSADA  360
PVRRLLGSSS GSAALTLSSE GLVEAGSTKP RRLSLSEPRQ MPPGDDNIDT GG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.33710.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G053200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164700.0AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325901.30.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1WQ170.0A0A2K1WQ17_POPTR; Uncharacterized protein
STRINGXP_002512627.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1