PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G059300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 252aa    MW: 26690.3 Da    PI: 6.7737
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G059300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.11.7e-2870130259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqKe+ gs+fpr+YYrCt +   +Cp+kk+v+r ++dp  +e++Y+geH+++
  Potri.019G059300.1  70 EDGFSWRKYGQKEILGSKFPRAYYRCTNQnlyHCPAKKQVQRLDDDPCRLEVVYRGEHTCH 130
                         7***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-2764130IPR003657WRKY domain
SuperFamilySSF1182904.97E-2567131IPR003657WRKY domain
SMARTSM007745.1E-3769131IPR003657WRKY domain
PfamPF031069.8E-2670130IPR003657WRKY domain
PROSITE profilePS5081119.88770132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGSGGLAIES GSRSDVESGS RSDVQAVDAS DSGRGSSSSS KRPRIRNDDA EKRTVRVPAQ  60
QFGNTEIPPE DGFSWRKYGQ KEILGSKFPR AYYRCTNQNL YHCPAKKQVQ RLDDDPCRLE  120
VVYRGEHTCH LSATAPSAPP PAPGITQEMA QTMIGQPQPS TATSLGRWVL EFRLGPGGGA  180
GSSSSSSMAA GSSGGAAGPS TVGRYGKEAD YPITDMADAM FNSGSSSTNS MELIFPSISE  240
EKRDQPSDKN N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1970129968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G059300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179320.0JN117932.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001383.11e-125PREDICTED: WRKY transcription factor 55
TrEMBLA0A2K1WQC31e-136A0A2K1WQC3_POPTR; Uncharacterized protein
STRINGPOPTR_0019s08730.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.18e-41WRKY DNA-binding protein 55