PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G063000.1
Common NamePOPTR_0019s09130g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 217aa    MW: 25041.1 Da    PI: 8.6754
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G063000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.81.2e-1571532128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk................kvka...eekewyfFskrdkkya..t 70 
                         ++GfrF+Pt+ el ++yL +kv g +l++  ++++ d+y + ePw++ +                +v+a    +++++fF++ +k ++  +
  Potri.019G063000.1   7 AVGFRFNPTEAELACHYLYNKVMGLPLSCPYIVQDYDLYGHeEPWQIWEnfgeynnttsddedddEVEAgpsPQDDLFFFTNLRKINPgmK 97 
                         58***************************889*******9878****64478899888887777733333323347799998888777444 PP

                 NAM  71 gkrknr.a.tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++  r +  + g+W+  g d + ++ ++  ++ ++   +  + +  +  ++W+m ey+l
  Potri.019G063000.1  98 SSKFDRgVgSNGGRWH--GDDVHSFH-SKGITWNRRRYCYK-NPNIGTPDASWIMLEYSL 153
                         55666642356999*9..67777777.45566777776665.566666799*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-184173IPR003441NAC domain
PROSITE profilePS5100519.5426173IPR003441NAC domain
PfamPF023653.0E-138153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSLANIAVGF RFNPTEAELA CHYLYNKVMG LPLSCPYIVQ DYDLYGHEEP WQIWENFGEY  60
NNTTSDDEDD DEVEAGPSPQ DDLFFFTNLR KINPGMKSSK FDRGVGSNGG RWHGDDVHSF  120
HSKGITWNRR RYCYKNPNIG TPDASWIMLE YSLDDSLMQN VPHYTVLCRI RKKSNKNCSR  180
KRKSSQSSSQ PEPKRQSKKL NSKLRTPPIK EKKLFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G063000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371329.11e-164protein SOMBRERO
RefseqXP_024448620.11e-164protein SOMBRERO-like
TrEMBLA0A385JHK61e-162A0A385JHK6_POPTO; NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLB9N1S71e-162B9N1S7_POPTR; Uncharacterized protein
STRINGPOPTR_0019s09130.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-10NAC family protein