PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G075500.1
Common NamePOPTR_0019s10420g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 176aa    MW: 19622.9 Da    PI: 5.6015
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G075500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-191162156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        s y+GVr +k +g+Wv+eIr+p   gk+ r++lg+f t+e+Aa+a++ a++ ++g+
  Potri.019G075500.1 11 SSYRGVRKRK-WGKWVSEIREP---GKKNRIWLGSFETPEMAAAAYDVAALHFRGH 62
                        67*****999.**********8...5579**********************99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-231170IPR016177DNA-binding domain
CDDcd000181.77E-221171No hitNo description
PfamPF008471.8E-121162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-321270IPR001471AP2/ERF domain
PROSITE profilePS5103223.5651269IPR001471AP2/ERF domain
SMARTSM003804.3E-371275IPR001471AP2/ERF domain
PRINTSPR003677.5E-101324IPR001471AP2/ERF domain
PRINTSPR003677.5E-103551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEERNTGGVS SSYRGVRKRK WGKWVSEIRE PGKKNRIWLG SFETPEMAAA AYDVAALHFR  60
GHDARVNFPD LVHDLPKPTS SSSEDIRMAA HEAAMSLRPF TAESSHGGSS TSNVGPITVR  120
LSASQIQAIN ESPLDSPKMW MHMSEIAILE ESMVFSNNIE EDEWDNKQTY SLWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-161373667ATERF1
3gcc_A1e-161373667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G075500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325519.11e-128ethylene-responsive transcription factor ERF021
SwissprotQ9C9I26e-65ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLB9IQB61e-126B9IQB6_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10420.11e-127(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-67ERF family protein