PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G079900.3
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 262aa    MW: 28431.7 Da    PI: 6.0844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G079900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.5e-11197242655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+     +k  + a++L +A  Y+k Lq
  Potri.019G079900.3 197 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEALAYVKFLQ 242
                         689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.132191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-16194255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.16E-11195246No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15196255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-8197242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-12197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MQPTPAGSSN TSAGGGSAGG GGGGGIARFR SAPATWIEAL LGEEEEDPLK QSQNLTELLT  60
SNTPSSRDSV PFNASSAAVE PGLFEPVGGF QRQNSSPTDF LRSSGIGSDQ GYFSSYGNAS  120
NYEYMTPNMD VSPSDKRARE VELQNPSARY PPPPSKGEQT GPLRASSLIE MEMDKLLEDS  180
VPCRVRAKRG CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKQTNTADM LDEALAYVKF  240
LQRQIQELTE QQRKCKCIAK E*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G079900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325537.30.0transcription factor bHLH81
SwissprotQ9C8P81e-85BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2K1WRC80.0A0A2K1WRC8_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10900.11e-162(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.16e-76bHLH family protein