PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G088000.1
Common NamePOPTR_0019s11780g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 130aa    MW: 14686.5 Da    PI: 8.8077
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G088000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-162063148
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                        s+y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++ 
  Potri.019G088000.1 20 SRYLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAVAYDL 63
                        7899******.**********865...5******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-182079IPR016177DNA-binding domain
CDDcd000181.13E-242078No hitNo description
PfamPF008472.1E-92063IPR001471AP2/ERF domain
SMARTSM003805.6E-252185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-252178IPR001471AP2/ERF domain
PROSITE profilePS5103220.4422179IPR001471AP2/ERF domain
PRINTSPR003674.9E-92233IPR001471AP2/ERF domain
PRINTSPR003674.9E-94460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MENFPPLLYR NPKRSSRQSS RYLGVRRRPW GRYAAEIRNP YTKERHWLGT FDTAEEAAVA  60
YDLSSISFSG IERARTNFYY PFFAHPSPSQ EAPPPPLPPP EMEKGDQLGM EDVDGNNALE  120
ILLKAGNGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1518701164Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G088000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446878.17e-80ethylene-responsive transcription factor LEP
SwissprotQ3E7032e-28ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A3N7I8W02e-78A0A3N7I8W0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s11780.11e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145131317
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.14e-30ERF family protein