PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G089000.1
Common NamePOPTR_0019s11870g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 268aa    MW: 29402.6 Da    PI: 8.2309
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G089000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.7e-1374120354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E++RR+riN  +++Lr+l+P       +K++Ka+ L +++ ++k+L
  Potri.019G089000.1  74 KNHSEAEKKRRARINAHLDTLRSLVPGT-----RKMDKASLLAEVIAHLKEL 120
                         58*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.27971120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1074120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-1274123No hitNo description
SuperFamilySSF474591.96E-1475129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1475145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.28E-4159200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEPCSWNSTR VQASDFEGMS DGFLVNTGLQ AKTRTGPSST SSLVLDNERG ELVEATVRME  60
RKGVAAERSI AALKNHSEAE KKRRARINAH LDTLRSLVPG TRKMDKASLL AEVIAHLKEL  120
KRQATEASEG LLMPLDIDEV RVEQQEDGLL SAPYVIRASI CCDCKPGILS DLRQALDALH  180
LIIMKAEIAT LEGRMKNVFV MSSCKEGDSG DAKVHQFLAG SIHQAFRSIL DKFSASQEFL  240
LKSTLSNKRR RVDSFKPSLS SSSGDLW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G089000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2167660.0AC216766.1 Populus trichocarpa clone POP029-O12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325576.10.0transcription factor bHLH30
TrEMBLB9IQN90.0B9IQN9_POPTR; Uncharacterized protein
STRINGPOPTR_0019s11870.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-34bHLH family protein