PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G089300.1
Common NamePOPTR_0019s11900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 86aa    MW: 9642.11 Da    PI: 9.8734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G089300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-054770629
                        HHHHHHHHHHHHHHHHHHHCTSCC CS
                 HLH  6 nerErrRRdriNsafeeLrellPk 29
                        +e+Er+ R++iN+ +++L+  +P 
  Potri.019G089300.1 47 SEAERKPRAKINKHLDTLKNRVPG 70
                        689*****************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.3244185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-54481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-44771IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MAEYNRSCST SSLVVCNERG ELVEVTARVD KKTVSAERNI TALMNVSEAE RKPRAKINKH  60
LDTLKNRVPG THKLVVFFRI DQVEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G089300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376342.13e-21transcription factor bHLH30
RefseqXP_011038201.13e-21PREDICTED: transcription factor bHLH30-like
TrEMBLB9IQP24e-55B9IQP2_POPTR; Uncharacterized protein
STRINGPOPTR_0019s11900.17e-56(Populus trichocarpa)