PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G112000.1
Common NamePOPTR_0019s12530g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 144aa    MW: 15721.1 Da    PI: 9.5159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G112000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.24e-0533721054
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        + R +++ +++  L++l+ +      +K + a++L +A+eYI+ L
  Potri.019G112000.1 33 KERKEKLGERIVALQQLVSPY-----GKTDTASVLMEAMEYIRFL 72
                        66788889999999**99999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-102288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.4332372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-122985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00152978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.46E-63377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MMENKRSPCS VDHGTLTSLA TKRHKADFSI STKERKEKLG ERIVALQQLV SPYGKTDTAS  60
VLMEAMEYIR FLHEQVQVLS APYLQGTSTA QMQGLGQHSL ESKGLCLVPI SYTAGIARSN  120
GADIWAPIKS PSPKCNKSIS QFH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.87111e-123stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G112000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090432e-82AC209043.1 Populus trichocarpa clone POP055-H02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325599.21e-104transcription factor bHLH153
RefseqXP_024447267.11e-104transcription factor bHLH153
SwissprotQ7XJU24e-58BH153_ARATH; Transcription factor bHLH153
TrEMBLB9IQU51e-103B9IQU5_POPTR; Uncharacterized protein
STRINGPOPTR_0019s12530.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Representative plantOGRP13421337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.51e-60bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]