PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G118900.1
Common NamePOPTR_0019s14140g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 251aa    MW: 28403.5 Da    PI: 4.5361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G118900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +l  +v+++G+ +W+  +++ g+ R++k+c++rw++yl
  Potri.019G118900.1 14 KGAWTPEEDMKLMAYVTRYGSWNWRQLPKYAGLQRCGKSCRLRWLNYL 61
                        79********************************************97 PP
2Myb_DNA-binding56.66.1e-1867111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ T+eE+e+++ +++ lG++ W++Ia+ ++ gRt++++k++w++ 
  Potri.019G118900.1  67 RGNYTKEEEEIIISLHETLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111
                         899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.637961IPR017930Myb domain
SuperFamilySSF466895.03E-3012108IPR009057Homeodomain-like
SMARTSM007173.4E-101363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
CDDcd001677.80E-91661No hitNo description
PROSITE profilePS5129425.8562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2665116IPR009057Homeodomain-like
SMARTSM007172.4E-1766114IPR001005SANT/Myb domain
PfamPF002492.6E-1667111IPR001005SANT/Myb domain
CDDcd001679.09E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MARTPCCDKT ELKKGAWTPE EDMKLMAYVT RYGSWNWRQL PKYAGLQRCG KSCRLRWLNY  60
LRPNIKRGNY TKEEEEIIIS LHETLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRLSEKS  120
VEATRSCSDD DKGQEKDTGE TEVNKQIPAN SAQIIESSSS ALSPQASSGD FSTTDNIAAT  180
NMDLVSDDDL SFLEAYEIPS GNFWTEPFLS DDYFMPNDFL APLVNPDSPI FDGEISSPFA  240
FINTEDYNLY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30111164108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G118900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325681.10.0transcription factor MYB4
TrEMBLB9INU30.0B9INU3_POPTR; Uncharacterized protein
STRINGPOPTR_0019s14140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-63myb domain protein 14