PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.T024300.1

Common Name

POPTR_0011s12790g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NZZ/SPL

Protein Properties

Length: 324aa MW: 35441.5 Da PI: 8.3542

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.T024300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	24	6.8e-08	6	215	4	177
NOZZLE 4 slffmstdqnsvrnpnellrntrlvvnssgeirtetkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatv..gd.....ts 90 slf+m ++n + + + t+ + r t + ++p + + q +kk rgmgva+le +i+e k ++ a++ g t Potri.T024300.1 6 SLFLMPNNDNKQEPTQTMAISTKP----AEPARRSTATNQSKRPTTSKC-QTRKKQCQRGMGVAQLESLRIQERWKAITEANQniGAlnlqpTQ 94 566666655554333333333333....334555666667777876655.55677789*************999996654411431111122 PP NOZZLE 91 sv.......aai..sntatrlpvpvdrgvvlqgfps.......................slgssrilcggvgsgqvmidpvis...pwgfvets 149 + + +n+ ++ v+rgv g + g gsgqv+++p + p v + Potri.T024300.1 95 QLhdhypsnYNTdnNNQMLQYGTTVNRGVP-----MssnggvfngflgwdhqggvvvkrVDGFNVNNNDGFGSGQVFVNPYLVgsvPVHQVGAP 183 111111000111002222334444555543.....24455566777779988877777433447777889999999999965312355555554 PP NOZZLE 150 a....tthelssisnpqmynassnnrcdtcfk 177 a +++elssi++ ++ rcd cfk Potri.T024300.1 184 ApvfeASKELSSIPKVMQHQQYEPSRCDLCFK 215 422224679**9999999999****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	5.1E-5	37	215	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MATPLSLFLM PNNDNKQEPT QTMAISTKPA EPARRSTATN QSKRPTTSKC QTRKKQCQRG 60 MGVAQLESLR IQERWKAITE ANQNIGALNL QPTQQLHDHY PSNYNTDNNN QMLQYGTTVN 120 RGVPMSSNGG VFNGFLGWDH QGGVVVKRVD GFNVNNNDGF GSGQVFVNPY LVGSVPVHQV 180 GAPAPVFEAS KELSSIPKVM QHQQYEPSRC DLCFKMGGFS ARAARSAPYA NHNHNNNEGT 240 SEVMAVHRKG NNPLGRNVIM EYEFFPGKNG ENTCFKEMEF PPPEASVAVG TGEAFCVTTY 300 SDYSGYSASN ASNSIDLSLK LSY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.T024300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216449	0.0	AC216449.1 Populus trichocarpa clone POP006-O09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316937.1	0.0	uncharacterized protein LOC7460862
Refseq	XP_024467442.1	0.0	uncharacterized protein LOC112329130
TrEMBL	B9I020	0.0	B9I020_POPTR; Uncharacterized protein
STRING	POPTR_0011s12790.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8365	17	23
Representative plant	OGRP10010	5	8

Link Out ? help Back to Top
Phytozome	Potri.T024300.1
Entrez Gene	7460862