PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T036100.1
Common NamePOPTR_0003s00470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13744.9 Da    PI: 10.5664
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T036100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.72.1e-137105497
                      E-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS..S CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr..s 88 
                      +l+  dv    r+++p k ++e+     +gk  ++ +l ++d+sg++ ++ +++r k+++   v+++GW++Fv+a+gLk g  ++F ++++  +
  Potri.T036100.1   7 TLSETDVE--VRFSVPSKWFKENlfsrfEGK--NKLDLPVKDLSGEVQSFGFSVRTKGNHfkPVISRGWRKFVHAKGLKPGNKIIFVMENDpeT 96 
                      55444444..468*************98555..3458********777777777777776679************************9866545 PP

                      EE..EEEEE CS
               B3  89 efelvvkvf 97 
                      ++e++v v+
  Potri.T036100.1  97 GTEYKVEVI 105
                      566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.00144108IPR003340B3 DNA binding domain
SuperFamilySSF1019361.61E-11594IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-13594IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-136106No hitNo description
PfamPF023623.4E-1015103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MANLRKTLSE TDVEVRFSVP SKWFKENLFS RFEGKNKLDL PVKDLSGEVQ SFGFSVRTKG  60
NHFKPVISRG WRKFVHAKGL KPGNKIIFVM ENDPETGTEY KVEVIKEIRL FGRDIEGRV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T036100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2139260.0AC213926.1 Populus trichocarpa clone POP063-D18, complete sequence.
GenBankAC2141000.0AC214100.1 Populus trichocarpa clone POP063-I02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002456.16e-79PREDICTED: uncharacterized protein LOC105109432
TrEMBLB9GZ505e-80B9GZ50_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00470.19e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2850123