PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T036200.1
Common NamePOPTR_0015s03590g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13503.5 Da    PI: 6.795
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T036200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-10686383
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
               B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                     ++l+++   ++g l++p + +     ++  s+ + + d +g++W + ++++++ +   +l+ GW eFv++ +L++ D v++ 
  Potri.T036200.1  6 SKLLTKADIENG-LSIPASTLGPLPFQEGHSMNMHVHDGNGQEWIFSCSIKGNESVgRFLSVGWIEFVRERNLQVDDNVTIL 86
                     445566666666.99**9999888888899******************88444433478999***************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-12387IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-9485IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-10485No hitNo description
PfamPF023621.0E-8686IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MTTLFSKLLT KADIENGLSI PASTLGPLPF QEGHSMNMHV HDGNGQEWIF SCSIKGNESV  60
GRFLSVGWIE FVRERNLQVD DNVTILEEVM NNRATGTWIK IEVKRKIRLF GKDIWADVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T036200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091940.0AC209194.1 Populus trichocarpa clone POP091-C08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002451.16e-81PREDICTED: uncharacterized protein LOC105109425
TrEMBLA0A2K1R9502e-82A0A2K1R950_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03590.11e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13182519