PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.T036500.1

Common Name

POPTR_0003s00210g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 106aa MW: 11642.2 Da PI: 7.613

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.T036500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.8	5.9e-11	7	99	5	94
-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 5 ltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ++s l++g lvlp++ e g ke s ++e+ g ++ + + +sg+ v+t+GW + +++ gL++gD+v+F+ +++ ++++ Potri.T036500.1 7 KLTSIDLERG-LVLPRDSNLEPlqpfHGTKELS--TIVESAAGtrlpDPVTIHC--STRSGKLVFTRGWHDIARDAGLRSGDIVTFYQEENGGAQY 97 4456666666.8888887655578775555554..6667888855444444555..999999*************************666566555 PP EE CS B3 93 vv 94 ++ Potri.T036500.1 98 KM 99 54 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.41E-9	3	100	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.83E-8	3	101	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.1E-13	3	101	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.1E-8	5	99	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MEIFTVKLTS IDLERGLVLP RDSNLEPLQP FHGTKELSTI VESAAGTRLP DPVTIHCSTR 60 SGKLVFTRGW HDIARDAGLR SGDIVTFYQE ENGGAQYKMR VKNVG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.T036500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC217036	1e-130	AC217036.1 Populus trichocarpa clone POP039-B10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K1R925	2e-72	A0A2K1R925_POPTR; Uncharacterized protein
STRING	POPTR_0003s00210.1	4e-72	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16212	2	2

Link Out ? help Back to Top
Phytozome	Potri.T036500.1
Entrez Gene	7479344