PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T054600.1
Common NamePOPTR_0012s02030g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 119aa    MW: 13398.8 Da    PI: 11.18
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T054600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.12e-15487184
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84
                     f k+l  s +  ++rl++p kf+++    +g ++   +   +de g+ W +++++ r++  + vlt+GWkeF ++++Lk+gD v F  
  Potri.T054600.1  4 FSKIL--SKTDIKKRLTVPIKFLKSLpsfDGGHAL--KFEARDEGGEAWAFQCSVrRRGHPKPVLTRGWKEFINSKKLKTGDKVSFIK 87
                     66777..55555678********999*98444445..68888***********8844444459**********************973 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.2922104IPR003340B3 DNA binding domain
CDDcd100173.94E-16385No hitNo description
PfamPF023621.1E-12489IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-18492IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.8E-84112IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-13499IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MARFSKILSK TDIKKRLTVP IKFLKSLPSF DGGHALKFEA RDEGGEAWAF QCSVRRRGHP  60
KPVLTRGWKE FINSKKLKTG DKVSFIKCKN RATAKTSYRV RAEKEIKIFG AIIGYAPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15477RRRGHPKPVLTRGWKEFINSKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T054600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012049.12e-77PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU5FTR43e-80U5FTR4_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02030.15e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35520.12e-09auxin response factor 15