PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T054700.1
Common NamePOPTR_0219s00200g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 124aa    MW: 13884.3 Da    PI: 11.0428
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T054700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.1e-17111011097
                      HHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  10 vlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      + +s+ l++p+k++++     g      ++ +  desg +W++++++rkk++    vl+kGW+ Fv+ ++Lk+gD + F+l+++  ++++ +v+
  Potri.T054700.1  11 TDTSKTLSVPRKYLRSLpsfkG---GHAVEFQAIDESGFVWTFQCSIRKKGQYpkPVLSKGWRAFVRNKKLKVGDKIKFSLNQTAAATPFYRVR 101
                      4556679********9997643...35678999************9999999899**************************9998888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.2782103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-17392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-15392IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.3E-104103IPR003340B3 DNA binding domain
CDDcd100172.09E-18491No hitNo description
PfamPF023622.3E-1412101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MTTFSKILGK TDTSKTLSVP RKYLRSLPSF KGGHAVEFQA IDESGFVWTF QCSIRKKGQY  60
PKPVLSKGWR AFVRNKKLKV GDKIKFSLNQ TAAATPFYRV RAEKEVKIFG AIFGYSPIIA  120
TFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15478RKKGQYPKPVLSKGWRAFVRNKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T054700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010223.11e-82PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU7DW612e-84U7DW61_POPTR; Uncharacterized protein
STRINGPOPTR_0219s00200.14e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34310.11e-08auxin response factor 12