PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T078300.1
Common NamePOPTR_0017s04990g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 748aa    MW: 85499.2 Da    PI: 5.258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T078300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS205.23.7e-6383594374
             GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                       Ll+cA+a++ gdl+la++l++ + +      d+  +l++y +eAL +r+++    ly   +p++  ++ ++ +    ++ ++ +P++ fs lt
  Potri.T078300.1   8 KLLDCAKAIEVGDLHLADSLIKDILT------DNDDKLVKYCAEALVRRVYK----LY-PRNPRPLVPSCTDLRC---NMDYQFFPFFWFSELT 87 
                      79*******************99864......67789***************....44.2333333332233333...345899********** PP

             GRAS  98 aNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      + ++I++a+ g++rv +iDf+++ +G  W  Ll+   ++++++ s+ +T +g+  s++ + l+e+ e+L k A++l ++fe + +va++ +++ 
  Potri.T078300.1  88 TRNTIVDALTGKKRVQVIDFSLMaNGRRWCLLLDDYLKQSSDAISFHLTSIGPILSKKGDYLNEILEKLPKEAKKLPIEFEVKHMVASSPAEMV 181
                      *********************863799**************************9999***************************9999877777 PP

             GRAS 191 leeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklprese 280
                        +L++++   +E+++V + ++lh+ll+ ++++e     vL+ +k+l+P++++vveqea++n+++Fle f+++++y+s +fdsl + ++ +  +
  Potri.T078300.1 182 EAALKLERsseDETIVVRWEFELHKLLALPGAIET----VLSKLKELKPEIMIVVEQEASLNGQDFLECFTKSFRYHSIIFDSLgKDNFEHG-N 270
                      88888887778****************88888887....*********************************************66676554.5 PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      + +++ +++++r+i+n+va+eg++++ rh+t+++Wr+r+ ++GF+ v+l+++   +      + +  +y++ee +   vl+ +d +L+++SaW+
  Potri.T078300.1 271 HSKVLWEMYFRRQISNLVAQEGTDQIVRHQTFAEWRDRFCRSGFRHVRLQNQFKGTF---FGHLP--EYHIEEMNRHPVLYRHDDQLLFTSAWK 359
                      556666677****************************************98765543...33333..599***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.711344IPR005202Transcription factor GRAS
PfamPF035141.3E-608359IPR005202Transcription factor GRAS
PROSITE profilePS5080812.504696747IPR003656Zinc finger, BED-type
SMARTSM006141.4E-16696746IPR003656Zinc finger, BED-type
SuperFamilySSF576672.38E-7699744No hitNo description
PfamPF028921.7E-8699743IPR003656Zinc finger, BED-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MATPGFNKLL DCAKAIEVGD LHLADSLIKD ILTDNDDKLV KYCAEALVRR VYKLYPRNPR  60
PLVPSCTDLR CNMDYQFFPF FWFSELTTRN TIVDALTGKK RVQVIDFSLM ANGRRWCLLL  120
DDYLKQSSDA ISFHLTSIGP ILSKKGDYLN EILEKLPKEA KKLPIEFEVK HMVASSPAEM  180
VEAALKLERS SEDETIVVRW EFELHKLLAL PGAIETVLSK LKELKPEIMI VVEQEASLNG  240
QDFLECFTKS FRYHSIIFDS LGKDNFEHGN HSKVLWEMYF RRQISNLVAQ EGTDQIVRHQ  300
TFAEWRDRFC RSGFRHVRLQ NQFKGTFFGH LPEYHIEEMN RHPVLYRHDD QLLFTSAWKS  360
YPTQLNSESL DNWNQESAMG DGNIMQIESS SLLILSGTVS SSAFLEDQPD DEHIIMEGKV  420
WSPECISINQ VAASAKIFDM LEYICHVNYL PLALTWMSDR RILRLEKSAC YLNDSTMVEF  480
MEACGEHHLE EGKGVAGKAL QSNSMYFVSD ISKLDVKDYP FIFEAWDFGL RGVVAIKLES  540
VYVSSIDYVV EFFLPLEMKG ISGQRLLINE ITNILQKNSR NSWKVCTQEL NGFNISSEVE  600
VTMEEVGTSN IRPAAISDSP PLALSEIGSL NSSQIRELCN IFKPTGDGVE VPEAHDQEFE  660
EQNSVFGPQA YQFPDSDELV GMDSSHINTS RTSKRRRTSE VWQYFDEVRE DGEVWAKCRS  720
CSTKYRGEST RGTTNLRKHL RSCPGKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-181235826378Protein SCARECROW
5b3h_A4e-181235825377Protein SCARECROW
5b3h_D4e-181235825377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T078300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372781.20.0uncharacterized protein LOC18106830
TrEMBLA0A2K1R7I70.0A0A2K1R7I7_POPTR; Uncharacterized protein
STRINGPOPTR_0017s04990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1586236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.14e-62GRAS family protein