PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T083800.1
Common NamePOPTR_0006s09020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 164aa    MW: 18017 Da    PI: 5.6056
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T083800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-053153123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ Fs+   L  H++ H
  Potri.T083800.1 31 YTCAFCKRGFSNAQALGGHMNIH 53
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.99E-62957No hitNo description
Gene3DG3DSA:3.30.160.602.6E-42955IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1773158IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDISPTSSTG KSDQIVCDSD YLQDSSHVRS YTCAFCKRGF SNAQALGGHM NIHRRDRAKL  60
KQASDENFLS LDITKSTEEI SRAPKTPCAL PVDQHVSFTL RNKASEEVQP LPFIVDVKAG  120
TDGDEDNKMQ LNQATMQAGL DLELRLGSDP HESSTRSSPR EFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15361RRDRAKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T083800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090990.0AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448448.11e-119transcriptional regulator TAC1-like
TrEMBLA0A2K1R7C81e-118A0A2K1R7C8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s09020.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-26C2H2 family protein