PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T116900.1
Common NamePOPTR_0183s00210g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 123aa    MW: 14281.6 Da    PI: 11.2091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T116900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.9e-11992485
                     E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3  4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld 85
                        +++  +++r+ +pkk ++++    g+  + +  +  d+ g++W +k+++r+ ++    ++++ W++F++++gLk gD v ++++
  Potri.T116900.1  9 SV-SKSDATNNRMEFPKKSLKNFpipAGQ--NYFNFVAVDTLGQRWGFKVSIRNVGRYkkPWMSGQWRRFAREKGLKKGDRVKLTMH 92
                     44.455556678********888877444..45789999***********984444334599*******************999943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.3475107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-13691IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-12792IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-12891No hitNo description
PfamPF023624.2E-81092IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEAVAMEKSV SKSDATNNRM EFPKKSLKNF PIPAGQNYFN FVAVDTLGQR WGFKVSIRNV  60
GRYKKPWMSG QWRRFAREKG LKKGDRVKLT MHVEGNAVRS YHITAERNLM MRIWIPVEEF  120
AR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T116900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016151.19e-79PREDICTED: uncharacterized protein LOC105119681
TrEMBLU7DZ152e-85U7DZ15_POPTR; Uncharacterized protein
STRINGPOPTR_0183s00210.13e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2309423