PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.T124700.1

Common Name

POPTR_0017s05840g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 180aa MW: 20547.3 Da PI: 4.8242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.T124700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.5	3.7e-07	97	155	1	55
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtr 55 +fY+ Y++++GF++++++ + s +++ + vCskeg+r + +k + r+++ Potri.T124700.1 97 EFYELYGRRMGFTICNNRARLSLKDN----SIIVCSKEGFRGGKMRKifkirelspelH---REKK 155 6*****************997666....5579*****999988777777764431...3333 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MVRHCFDSSM LLGFDISISD RLMMASSSGE QVHSNRNYRC LLAETFDGQE TAADELSDNL 60 DGNDNIIQES IQDFPLILEP FEPFIGMEFE SAEDAREFYE LYGRRMGFTI CNNRARLSLK 120 DNSIIVCSKE GFRGGKMRKI FKIRELSPEL HREKKKSAAY QQHLQMVLTC IEENTTSIP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.12328	7e-68	bud\| catkin

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.T124700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024448817.1	1e-97	uncharacterized protein LOC112323294
TrEMBL	B9MY37	1e-130	B9MY37_POPTR; Uncharacterized protein
STRING	POPTR_0017s05840.1	1e-131	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP8956	5	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-11	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Potri.T124700.1
Entrez Gene	18106915