PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T152700.1
Common NamePOPTR_0248s00220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 122aa    MW: 13359.7 Da    PI: 11.0214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T152700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.27e-14591287
                     EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3  2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                      kvl +  +  ++rl++p  f+++     gg     ++ +  d sgr+W++++++rkk+    v++kGW  Fv ++ Lk+gD v F  +++
  Potri.T152700.1  5 SKVLRK--TDIKKRLSVPTGFLSSLssfnGGA--HAVDFQAVDGSGRVWTFRCSIRKKGHPkPVISKGWLAFVASKSLKVGDKVQFLKEKN 91
                     566633..333457********9999986555..56789999***********886665546************************85544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.9522105IPR003340B3 DNA binding domain
CDDcd100174.77E-18392No hitNo description
SMARTSM010198.2E-44114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-15491IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-17493IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-11591IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MARFSKVLRK TDIKKRLSVP TGFLSSLSSF NGGAHAVDFQ AVDGSGRVWT FRCSIRKKGH  60
PKPVISKGWL AFVASKSLKV GDKVQFLKEK NEAGAKTHAY EMRAEKEIKI FGAVFGYAPI  120
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T152700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-171AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006364.12e-76PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLU7E1T22e-82U7E1T2_POPTR; Uncharacterized protein
STRINGPOPTR_0248s00220.13e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-07B3 family protein