PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T152900.1
Common NamePOPTR_0015s01770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 150aa    MW: 16506.1 Da    PI: 11.1827
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T152900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.9e-1214911387
                     TT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3 13 sgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87
                     ++rl++p  f+++      gg     ++ +  d sgr+W +++++rkk+    v++kGW  Fv ++ Lk gD v F  +++
  Potri.T152900.1 14 KKRLSVPTGFLSSLpsfnaGG---HAVDFQAVDGSGRVWAFRCSIRKKGHPkPVISKGWLAFVASKSLKGGDKVQFLKEKN 91
                     4679*******9999876433...456788889999*******886665546***********************985544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.97E-15392No hitNo description
Gene3DG3DSA:2.40.330.101.1E-15492IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-12491IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-91491IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MARFSKGLRK TDIKKRLSVP TGFLSSLPSF NAGGHAVDFQ AVDGSGRVWA FRCSIRKKGH  60
PKPVISKGWL AFVASKSLKG GDKVQFLKEK NEAGAKTHAY EIRAGKEIKI FGDVLGYAPI  120
TYRGPNNDKH RLILNFRGPN NDKHRLTLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T152900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-153AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024449085.11e-74AP2/ERF and B3 domain-containing transcription factor RAV1-like
TrEMBLB9IDT41e-105B9IDT4_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01770.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.13e-08related to ABI3/VP1 1