PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_19020V3.2.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 419aa    MW: 44716.2 Da    PI: 6.311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_19020V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08299339954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Pp3c10_19020V3.2.p 299 ARHRRERISDRIRVLQRLVPGG-----TKMDTASMLDEAIHYVKFL 339
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-13291348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-11292344No hitNo description
SuperFamilySSF474599.95E-14294348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5300339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MLETSMNPLL NYSQSQSVFP QLMGAADQQS LMEAFAQANA GCMLNQPSQG GGDSLDTLLK  60
SSNSSSMVDS STSEMTSPDN YCVGAPENNL HMNCISSLGG GPVSPVLTNM LDRTASTGAC  120
LVAAHQQSKS EFFRMESPGG PLSPGAPPCG ESEDSLHGGE ASMTGLKRRF DGGDKNWMVD  180
QMHGSRKQQK PQLQQSEKAL GFQDSVGGFV DAASTAGMPG KYSDLATVPS VMQPPPLSFL  240
PSIAAGGASS GVDIDKFASV RAILFRHASQ PIPTLEEIAS SRPKRRNVRI SKDPQSVAAR  300
HRRERISDRI RVLQRLVPGG TKMDTASMLD EAIHYVKFLK LQLQTLEQIG NNCCDPRSFP  360
QQGSAAEELA SLVRPFDLNC TAAFQTWPIP PATMGNHGDT STKWGTEANQ ATFSDGRM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1564007e-88EF156400.1 Physcomitrella patens indehiscent 1 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024385803.10.0uncharacterized protein LOC112287226 isoform X2
TrEMBLA0A2K1JZM50.0A0A2K1JZM5_PHYPA; Uncharacterized protein
STRINGPP1S67_37V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.13e-28bHLH family protein