PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c10_24540V3.2.p

Common Name

PHYPADRAFT_71326

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

G2-like

Protein Properties

Length: 254aa MW: 28764.7 Da PI: 8.1814

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c10_24540V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	81.7	8.3e-26	63	116	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +l+Wt +LH++F+ av++LGG++kAtPk+i+++m+ + +t++hvkSHLQ+ R+ Pp3c10_24540V3.2.p 63 HKLKWTLDLHQCFMGAVNRLGGKDKATPKRIVQCMGRDRITIAHVKSHLQMLRM 116 589************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-23	59	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-10	64	116	IPR009057	Homeodomain-like
Pfam	PF00249	5.0E-6	64	114	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	5.7E-21	64	116	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000006	anatomy	plant protoplast
PO:0030003	anatomy	protonema
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MVLGLDLFDF NHDGRGDESG IPHLLPTTSR RSTHKIHTVT GDESLATFKQ YRKIRPYVRS 60 SMHKLKWTLD LHQCFMGAVN RLGGKDKATP KRIVQCMGRD RITIAHVKSH LQMLRMGRIN 120 EEGMSNADAV PVADRHPHDS ESCMKNLSST ERHANLLREA VEVLKEPQLQ KYGLIFGAAE 180 AEMLQRRVAD SQALQRHKAC EYDQQASGKY WDSHVCPEVP LDDECATGRY RNDEEPLQLN 240 LTMAIGAPHL RHH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024387570.1	0.0	myb family transcription factor PHL8-like
TrEMBL	A9RW47	0.0	A9RW47_PHYPA; Predicted protein
STRING	PP1S32_66V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	9e-21	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pp3c10_24540V3.2.p
Entrez Gene	5921574

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]