PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_25720V3.3.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family Trihelix
Protein Properties Length: 579aa    MW: 63863.2 Da    PI: 9.5274
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_25720V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.43.1e-12210290276
            trihelix   2 WtkqevlaLiearremeerlrrg........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                         W++ e  aL++a re++ +l ++        k++  +W+ev   +   g+ r+pk+ + kw+nl++ +k+i++++kk   ++ 
  Pp3c10_25720V3.3.p 210 WQDAEMDALVKAFREVNFKLAAAgkkgkqvfKSANDKWKEVRTLLLGAGVDRQPKEIERKWSNLSTAFKQIADWNKKV--GRP 290
                         ***************9999997533344444599******************************************95..333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-9209297No hitNo description
Gene3DG3DSA:3.40.50.6207.1E-18381438IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF523749.6E-33384572No hitNo description
PfamPF014677.5E-12388543IPR004821Cytidyltransferase-like domain
Gene3DG3DSA:3.40.50.6205.0E-33439569IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009435Biological ProcessNAD biosynthetic process
GO:0009555Biological Processpollen development
GO:0009860Biological Processpollen tube growth
GO:0000309Molecular Functionnicotinamide-nucleotide adenylyltransferase activity
GO:0004515Molecular Functionnicotinate-nucleotide adenylyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MEQGAPPSAL IEGALSTATN LDQADHSFVN QFGRDSFSGG KRQSSYTNSG YSNRQGFVRD  60
SQIAFTSFIE KGAFPHHEFP RDTVVKDSGG TTFPESGPAI KRQKRPEWWQ ESEGVERTPE  120
PFKHVHSGVN ANATPPTVPA FGSPVIPFRD TQSRMGSSLV GIEGNLVEGE LGASSGEGAG  180
VGEDEDGGDG DGKERSDKEG FARKKRAEMW QDAEMDALVK AFREVNFKLA AAGKKGKQVF  240
KSANDKWKEV RTLLLGAGVD RQPKEIERKW SNLSTAFKQI ADWNKKVGRP SYWELDEVLK  300
KEKTKAKELP ATFRVQLFEA MTEIMGDRQG SRSRSPAQGT PGHVPVPGLP RPPSAPGVVE  360
MPLPMEKLVV HANLLDGGNH KKSRVVLLAP GSFNPPTYMH LRMFELGRDA LRAEGYQVLG  420
GYMSPVNDQY HKKAKQSSSQ RTITVLARIE TAINSNNLVS DEKARVMLLC GTDLLESLIT  480
PGVWIPDQVR ALLQDYGIVC INQSGKDARR LVFEDDVLYS NRRQILVVDE NIKNSISATA  540
IRRNLARGLS VRYLTPDPVI SHIKMHSLYM NVHTPQQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1nup_A3e-353825692233FKSG76
1nup_B3e-353825692233FKSG76
1nuq_A3e-353825692233FKSG76
1nuq_B3e-353825692233FKSG76
1nur_A3e-353825692233FKSG76
1nur_B3e-353825692233FKSG76
1nus_A3e-353825692233FKSG76
1nus_B3e-353825692233FKSG76
1nut_A3e-353825692233FKSG76
1nut_B3e-353825692233FKSG76
1nuu_A3e-353825692233FKSG76
1nuu_B3e-353825692233FKSG76
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.15751e-151protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387340.10.0uncharacterized protein LOC112287926 isoform X1
RefseqXP_024387342.10.0uncharacterized protein LOC112287926 isoform X1
TrEMBLA0A2K1K0E90.0A0A2K1K0E9_PHYPA; Uncharacterized protein
STRINGPP1S330_22V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-06Trihelix family protein