PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_3440V3.1.p
Common NamePHYPADRAFT_163083
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 219aa    MW: 23975 Da    PI: 7.2342
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_3440V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-054870123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       +kC+ Cg+sF+ +  L  H++ H
  Pp3c10_3440V3.1.p 48 FKCKFCGRSFRKHQALGGHMNAH 70
                       89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-54472IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.57E-74574No hitNo description
PfamPF139128.2E-74872IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.7594875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVWCGGGAAL AIAGLASSET MEMAMAMLRS GGGGGSLEAP QQQQDEPFKC KFCGRSFRKH  60
QALGGHMNAH QEARDREKLE KLHDRLCRPR INGAPLKPLY PEVNDNHYGP ANEMPPYQMP  120
AQISIGYPPD PPMRASHNRE GPMFPTYANA YPTAVPYGVP YQAATPLLDN SMRNPPALSP  180
QGPRHPLEPV RSQHRASASS PFEAESDFQF GRFFSQED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386618.11e-161zinc finger protein JAGGED-like
TrEMBLA9S6D31e-160A9S6D3_PHYPA; Predicted protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-09C2H2 family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]