PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_3440V3.2.p
Common NamePHYPADRAFT_163083
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 180aa    MW: 20289.7 Da    PI: 8.1045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_3440V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05931123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       +kC+ Cg+sF+ +  L  H++ H
  Pp3c10_3440V3.2.p  9 FKCKFCGRSFRKHQALGGHMNAH 31
                       89******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.29E-7635No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5833IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.759936IPR007087Zinc finger, C2H2
PfamPF139126.2E-7933IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
PQQQQDEPFK CKFCGRSFRK HQALGGHMNA HQEARDREKL EKLHDRLCRP RINGAPLKPL  60
YPEVNDNHYG PANEMPPYQM PAQISIGYPP DPPMRASHNR EGPMFPTYAN AYPTAVPYGV  120
PYQAATPLLD NSMRNPPALS PQGPRHPLEP VRSQHRASAS SPFEAESDFQ FGRFFSQED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386618.11e-130zinc finger protein JAGGED-like
TrEMBLA9S6D31e-129A9S6D3_PHYPA; Predicted protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-09zinc-finger protein 10
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]