PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_4280V3.12.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 565aa    MW: 60302.9 Da    PI: 5.0329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_4280V3.12.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH382.9e-12384426754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++ +Lr+++Pk      +K++ a+iL  A+eY+k+L
  Pp3c10_4280V3.12.p 384 MAERRRRKKLNDRLYTLRSVVPKI-----TKMDRASILGDAIEYLKEL 426
                         79*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.917377426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16380449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-10383426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14383432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-15384442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-13384430No hitNo description
CDDcd048732.73E-6493534No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MASQSNSDMW MGAASSEISL PSNPALELEE ETSWKVSTSS QSTSNIEVKT GVQENVGTPS  60
FSKGVLDEEW YTPETSLMEL SYSLPYGISD TRTGFGMLES SLNFDSSSNL MSSFRPAPSA  120
LSMGLESNRS LEDLVCTGQG SSNVGLLSSL SPGGQLGRST VMESFSSGLP TSFNQGIINA  180
GGSITNITSS NINNVRSNFP LMASPSNFSD AYRARSVSED KSGKVVGSGG PRNELVPYHR  240
NKGAETRSHG QGQQTLFLKR AASRRCAGSS GTVSPVSKSP PRVVTSASND SSVDTPDKDS  300
PHPRNAHLQS ASGRLNINSG SDDPNDMGLD GDDYDAKDDD DLDESGDGSG GPYEVEEGAG  360
NGADQSIGKG NGKGKRGLPA KNLMAERRRR KKLNDRLYTL RSVVPKITKM DRASILGDAI  420
EYLKELLQRI NEIHNELEAA KLEQSRSMPS SPTPRSTQGY PATVKEECPV LPNPESQPPR  480
VEVRKREGQA LNIHMFCARR PGLLLSTVKA LDALGLDVQQ AVISCFNGFA LDLFRAEAKD  540
VDVGPEEIKA VLLLTAGCDL HSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14376443377Transcription factor MYC2
5gnj_B2e-14376443377Transcription factor MYC2
5gnj_E2e-14376443377Transcription factor MYC2
5gnj_F2e-14376443377Transcription factor MYC2
5gnj_G2e-14376443377Transcription factor MYC2
5gnj_I2e-14376443377Transcription factor MYC2
5gnj_M2e-14376443377Transcription factor MYC2
5gnj_N2e-14376443377Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385392ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.80260.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386990.10.0hyphally regulated cell wall protein 3-like isoform X1
RefseqXP_024386991.10.0hyphally regulated cell wall protein 3-like isoform X1
RefseqXP_024386992.10.0hyphally regulated cell wall protein 3-like isoform X1
RefseqXP_024386993.10.0hyphally regulated cell wall protein 3-like isoform X1
TrEMBLA0A2K1JXN50.0A0A2K1JXN5_PHYPA; Uncharacterized protein
STRINGPP1S51_178V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.19e-77bHLH family protein