PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_4280V3.15.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 473aa    MW: 50619.4 Da    PI: 6.4176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_4280V3.15.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.3e-12292334754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++ +Lr+++Pk      +K++ a+iL  A+eY+k+L
  Pp3c10_4280V3.15.p 292 MAERRRRKKLNDRLYTLRSVVPKI-----TKMDRASILGDAIEYLKEL 334
                         79*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.917285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-16288357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-10291334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-15292350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.21E-13292338No hitNo description
CDDcd048732.09E-6401442No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MELSYSLPYG ISDTRTGFGM LESSLNFDSS SNLMSSFRPA PSALSMGLES NRSLEDLVCT  60
GGQLGRSTVM ESFSSGLPTS FNQGIINAGG SITNITSSNI NNVRSNFPLM ASPSNFSDAY  120
RARSVSEDKS GKVVGSGGPR NELVPYHRNK GAETRSHGQG QQTLFLKRAA SRRCAGSSGT  180
VSPVSKSPPR VVTSASNDSS VDTPDKDSPH PRNAHLQSAS GRLNINSGSD DPNDMGLDGD  240
DYDAKDDDDL DESGDGSGGP YEVEEGAGNG ADQSIGKGNG KGKRGLPAKN LMAERRRRKK  300
LNDRLYTLRS VVPKITKMDR ASILGDAIEY LKELLQRINE IHNELEAAKL EQSRSMPSSP  360
TPRSTQGYPA TVKEECPVLP NPESQPPRVE VRKREGQALN IHMFCARRPG LLLSTVKALD  420
ALGLDVQQAV ISCFNGFALD LFRAEAKDVD VGPEEIKAVL LLTAGCDLHS LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14284351377Transcription factor MYC2
5gnj_B1e-14284351377Transcription factor MYC2
5gnj_E1e-14284351377Transcription factor MYC2
5gnj_F1e-14284351377Transcription factor MYC2
5gnj_G1e-14284351377Transcription factor MYC2
5gnj_I1e-14284351377Transcription factor MYC2
5gnj_M1e-14284351377Transcription factor MYC2
5gnj_N1e-14284351377Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293300ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.80260.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386995.10.0hyphally regulated cell wall protein 3-like isoform X3
TrEMBLA0A2K1JXN50.0A0A2K1JXN5_PHYPA; Uncharacterized protein
STRINGPP1S51_178V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.11e-77bHLH family protein