PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_4280V3.6.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 561aa    MW: 59917.5 Da    PI: 5.0329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_4280V3.6.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12380422754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+++N+++ +Lr+++Pk      +K++ a+iL  A+eY+k+L
  Pp3c10_4280V3.6.p 380 MAERRRRKKLNDRLYTLRSVVPKI-----TKMDRASILGDAIEYLKEL 422
                        79*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.917373422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16376445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14379428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-10379422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-13380426No hitNo description
Gene3DG3DSA:4.10.280.108.6E-15380438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.70E-6489530No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MASQSNSDMW MGAASSEISL PSNPALELEE ETSWKVSTSS QSTSNIEVKE NVGTPSFSKG  60
VLDEEWYTPE TSLMELSYSL PYGISDTRTG FGMLESSLNF DSSSNLMSSF RPAPSALSMG  120
LESNRSLEDL VCTGQGSSNV GLLSSLSPGG QLGRSTVMES FSSGLPTSFN QGIINAGGSI  180
TNITSSNINN VRSNFPLMAS PSNFSDAYRA RSVSEDKSGK VVGSGGPRNE LVPYHRNKGA  240
ETRSHGQGQQ TLFLKRAASR RCAGSSGTVS PVSKSPPRVV TSASNDSSVD TPDKDSPHPR  300
NAHLQSASGR LNINSGSDDP NDMGLDGDDY DAKDDDDLDE SGDGSGGPYE VEEGAGNGAD  360
QSIGKGNGKG KRGLPAKNLM AERRRRKKLN DRLYTLRSVV PKITKMDRAS ILGDAIEYLK  420
ELLQRINEIH NELEAAKLEQ SRSMPSSPTP RSTQGYPATV KEECPVLPNP ESQPPRVEVR  480
KREGQALNIH MFCARRPGLL LSTVKALDAL GLDVQQAVIS CFNGFALDLF RAEAKDVDVG  540
PEEIKAVLLL TAGCDLHSLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14372439377Transcription factor MYC2
5gnj_B2e-14372439377Transcription factor MYC2
5gnj_E2e-14372439377Transcription factor MYC2
5gnj_F2e-14372439377Transcription factor MYC2
5gnj_G2e-14372439377Transcription factor MYC2
5gnj_I2e-14372439377Transcription factor MYC2
5gnj_M2e-14372439377Transcription factor MYC2
5gnj_N2e-14372439377Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1381388ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.80260.0protonema| sporophyte
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386994.10.0hyphally regulated cell wall protein 3-like isoform X2
TrEMBLA0A2K1JXN50.0A0A2K1JXN5_PHYPA; Uncharacterized protein
STRINGPP1S51_178V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.19e-77bHLH family protein