PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_680V3.10.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 448aa    MW: 50179.1 Da    PI: 6.9681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_680V3.10.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.41.5e-0759108156
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                        +gy+GVr+    g+W A++ +      r ++++lg+f + + A + ++ +  kl ge
  Pp3c10_680V3.10.p  59 TGYRGVRQVA-PGKWSASYAH------RgASIQLGRFESLDAAVRSYDSFVYKLCGE 108
                        69*****988.9******777......44**********************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.2660115IPR001471AP2/ERF domain
SMARTSM003800.001260121IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-960113IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-961113IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-7233290IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.2E-8233290IPR001471AP2/ERF domain
SMARTSM003805.8E-4233296IPR001471AP2/ERF domain
PROSITE profilePS5103211.864233290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MMEAVNAYDM VEYKIHGSDG LLNYDLAEDE VAELEKTDWN SLISNLGLKI YERRKPHKTG  60
YRGVRQVAPG KWSASYAHRG ASIQLGRFES LDAAVRSYDS FVYKLCGEAA KLNGALSDDE  120
KDQLCKLSLK EVRAALAVQA IRPPSSADLG ARGARFVGGK WEVCVESTMR DSLFLTTTIN  180
EAEATQVHDI AAYKLHKDFA KTYSELSLEL REQIDSVEWA TVAENFGFQR LPSYYGVRRL  240
VSGMWQSFIR YGGSYLPVGT FASAEMAAHA SDMCTYKLGG NSSGTLYNFP LEGFEKKKIE  300
KLQWCQLIAS LREEQEWSAH TTELADMEAA SAVDEKHLSR DKRWILFVCQ EQLIQQRMMR  360
RASRVGQQII VRRPELAEQF SPLNRRADGS PMLVEEVMEC NSAPLLWTCQ CGNLFLKSPA  420
SLAKIKPVCH QPGCTSVSRD RFSGSLN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.166930.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387253.10.0uncharacterized protein LOC112287888 isoform X1
STRINGPP1S95_69V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-08ERF family protein