PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_680V3.11.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 439aa    MW: 49153.9 Da    PI: 7.4299
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_680V3.11.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.51.4e-075099156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                       +gy+GVr+    g+W A++ +      r ++++lg+f + + A + ++ +  kl ge
  Pp3c10_680V3.11.p 50 TGYRGVRQVA-PGKWSASYAH------RgASIQLGRFESLDAAVRSYDSFVYKLCGE 99
                       69*****988.9******777......44**********************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.2651106IPR001471AP2/ERF domain
SMARTSM003800.001251112IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-951104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-952104IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-7224281IPR016177DNA-binding domain
PROSITE profilePS5103211.864224281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-8224281IPR001471AP2/ERF domain
SMARTSM003805.8E-4224287IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MVEYKIHGSD GLLNYDLAED EVAELEKTDW NSLISNLGLK IYERRKPHKT GYRGVRQVAP  60
GKWSASYAHR GASIQLGRFE SLDAAVRSYD SFVYKLCGEA AKLNGALSDD EKDQLCKLSL  120
KEVRAALAVQ AIRPPSSADL GARGARFVGG KWEVCVESTM RDSLFLTTTI NEAEATQVHD  180
IAAYKLHKDF AKTYSELSLE LREQIDSVEW ATVAENFGFQ RLPSYYGVRR LVSGMWQSFI  240
RYGGSYLPVG TFASAEMAAH ASDMCTYKLG GNSSGTLYNF PLEGFEKKKI EKLQWCQLIA  300
SLREEQEWSA HTTELADMEA ASAVDEKHLS RDKRWILFVC QEQLIQQRMM RRASRVGQQI  360
IVRRPELAEQ FSPLNRRADG SPMLVEEVME CNSAPLLWTC QCGNLFLKSP ASLAKIKPVC  420
HQPGCTSVSR DRFSGSLN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.166930.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024387253.10.0uncharacterized protein LOC112287888 isoform X1
STRINGPP1S95_69V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-08ERF family protein