PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c10_7030V3.1.p
Common NamePHYPADRAFT_182480
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 213aa    MW: 23822.4 Da    PI: 7.4243
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c10_7030V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-18653253
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                       +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa a+++a++ +
  Pp3c10_7030V3.1.p  6 RYRGVRQRH-WGSWVSEIRHP-----LlkTRVWLGTFETAEDAAHAYDEAARLM 53
                       69******9.**********8.....334*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.59E-31565No hitNo description
Gene3DG3DSA:3.30.730.101.2E-33663IPR001471AP2/ERF domain
PfamPF008477.5E-11653IPR001471AP2/ERF domain
PROSITE profilePS5103220.811663IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-20664IPR016177DNA-binding domain
SMARTSM003805.9E-40669IPR001471AP2/ERF domain
PRINTSPR003671.0E-10718IPR001471AP2/ERF domain
PRINTSPR003671.0E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MGRPQRYRGV RQRHWGSWVS EIRHPLLKTR VWLGTFETAE DAAHAYDEAA RLMCGVRART  60
NFPYDPNASK RPNSQMLSAT LSAKLHRWYL HSQQRDGQEG KSKDARMTQS LTCLCLDAEQ  120
SNLGIWQKKT GRQAEANWVR KVQFGDNNSP QTDSPQPENS SESCMSEEDK FAAEMIEELL  180
GYSPGQFSNF GSPAMSDSSC SSSCSAVTTA FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16563160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-16270170ATERF1
3gcc_A3e-16270170ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.113630.0sporophyte
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024386105.11e-160ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW51e-48ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA9S9841e-158A9S984_PHYPA; Predicted protein
STRINGPP1S79_25V6.11e-126(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-41ERF family protein
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]