PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_10350V3.3.p

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 270aa MW: 30067.3 Da PI: 4.4415

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_10350V3.3.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.7e-17	10	53	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++Edel+++++ +lG++ W++Ia +++ gRt++++k++w++ Pp3c11_10350V3.3.p 10 RGNFSPDEDELIIKLHSLLGNK-WSLIAGRIP-GRTDNEIKNYWNS 53 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-16	1	63	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-26	1	59	IPR009057	Homeodomain-like
PROSITE profile	PS51294	26.799	5	59	IPR017930	Myb domain
SMART	SM00717	3.6E-16	9	57	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-16	10	53	IPR001005	SANT/Myb domain
CDD	cd00167	2.38E-12	12	55	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MNYLRPDLKR GNFSPDEDEL IIKLHSLLGN KWSLIAGRIP GRTDNEIKNY WNSRLKRNLQ 60 DMEGNQRQQL VATPLSVSLL DSSTEIKVED FPCSNQLGMS GPPSPIDEKP PMEALLGTHH 120 HSNDLDPSII TKPQLLNSTD FHAMPRGEST LSEPTSSDGT CFEESCDHQS LEGYSSSCNW 180 APFDNTQKPL SFTQASSPES VLLFQQYFPS QPQDDFLCSD FGLTDFTSTN YIPEFTSLQN 240 LLQCGPFSPI HKNLPATWIG NYSGDGFQT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-14	2	59	51	108	B-MYB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388078.1	0.0	transcription factor MYB75-like
TrEMBL	A0A2K1JU78	0.0	A0A2K1JU78_PHYPA; Uncharacterized protein
STRING	PP1S61_196V6.1	0.0	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	2e-32	myb domain protein 3

Link Out ? help Back to Top
Phytozome	Pp3c11_10350V3.3.p