PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_10660V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family ERF
Protein Properties Length: 192aa    MW: 21160.8 Da    PI: 4.7411
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_10660V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-191464256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +g+Wv+eIr+p +   +kr++lg++ +aeeAa a++aa ++l+g+
  Pp3c11_10660V3.1.p 14 QYRGVRMRR-WGKWVSEIREPQN---KKRIWLGSYRSAEEAAHAYDAALLCLRGP 64
                        69****998.**********943...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-311372IPR001471AP2/ERF domain
SMARTSM003801.6E-351477IPR001471AP2/ERF domain
PROSITE profilePS5103222.7211471IPR001471AP2/ERF domain
CDDcd000182.06E-281472No hitNo description
SuperFamilySSF541713.92E-221472IPR016177DNA-binding domain
PfamPF008471.4E-121463IPR001471AP2/ERF domain
PRINTSPR003673.1E-91526IPR001471AP2/ERF domain
PRINTSPR003673.1E-93753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSGHQRGSSS SQRQYRGVRM RRWGKWVSEI REPQNKKRIW LGSYRSAEEA AHAYDAALLC  60
LRGPAANLNF PNYRPPLPPG TPGNYSTREI QAAAAGAAAA SVGRRFSYSE FMSPASSSDS  120
SDEELEDITY SHGSYGTSSQ SSHGDNWRAF EDDPYLVSDM ARGMLIQPPS YSDDDDSDDD  180
DDSYNGPSLW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-15672673Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11221RQYRGVRMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389442.11e-138ethylene-responsive transcription factor ERF024-like
TrEMBLA0A2K1JU931e-137A0A2K1JU93_PHYPA; Uncharacterized protein
STRINGPP1S61_230V6.11e-137(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.19e-18ERF family protein