PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_11230V3.9.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family LBD
Protein Properties Length: 252aa    MW: 27385.9 Da    PI: 7.973
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_11230V3.9.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.93.9e-3961071101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf aeq +++fa+vhk+FGasnv kll ++p ++r da+ ++ yeA+ar++dPvyG+v++i++lqqq+++l
  Pp3c11_11230V3.9.p   6 PCGACKFLRRKCVRGCIFAPYFGAEQgAARFAAVHKIFGASNVAKLLLHIPVSRRCDAVLTISYEAQARLSDPVYGCVATIFALQQQVASL 96 
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         +aela+++++l
  Pp3c11_11230V3.9.p  97 QAELAMVQAQL 107
                         *******9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1215107IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-386104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSSGAPCGAC KFLRRKCVRG CIFAPYFGAE QGAARFAAVH KIFGASNVAK LLLHIPVSRR  60
CDAVLTISYE AQARLSDPVY GCVATIFALQ QQVASLQAEL AMVQAQLVNR QAVAHQIHQH  120
QQQHHQHHHH LQQHEQIGTI SPGHVVPSSA YMQQQEHAQM SPSDISMSMP SGSGSHGPGS  180
YNSRVKEEGN SFLGMQHYAD LGMGSSSLEP MPENQHSLLS NLHKARGSGE NMEQTDHEGE  240
LQALASLLRR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3631088112LOB family transfactor Ramosa2.1
5ly0_B1e-3631088112LOB family transfactor Ramosa2.1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.76461e-135protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389181.10.0LOB domain-containing protein 29-like
RefseqXP_024389182.10.0LOB domain-containing protein 29-like
RefseqXP_024389183.10.0LOB domain-containing protein 29-like
RefseqXP_024389184.10.0LOB domain-containing protein 29-like
RefseqXP_024389185.10.0LOB domain-containing protein 29-like
RefseqXP_024389186.10.0LOB domain-containing protein 29-like
RefseqXP_024389187.10.0LOB domain-containing protein 29-like
TrEMBLA0A2K1JUB40.0A0A2K1JUB4_PHYPA; Uncharacterized protein
STRINGPP1S261_2V6.12e-96(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.18e-63LOB domain-containing protein 20