PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_13030V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family C2H2
Protein Properties Length: 225aa    MW: 25464.3 Da    PI: 6.6447
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_13030V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-0586108123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C++ F++   L  H+++H
  Pp3c11_13030V3.1.p  86 YSCSFCHREFRTAQALGGHMNVH 108
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.32E-783113No hitNo description
Gene3DG3DSA:3.30.160.605.6E-484112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.63586113IPR007087Zinc finger, C2H2
PfamPF139123.7E-686110IPR007087Zinc finger, C2H2
SMARTSM003550.006586108IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGTRTLLLSD QEYLRGGSSW GAMHDPDVHE SWTMPSNSSQ YAQVGGGGGN TWSRRNAANN  60
YESDSWEVRA FAEDASTSGQ WPPRSYSCSF CHREFRTAQA LGGHMNVHRR ERAQANQPLQ  120
LRSGTSMDTE PPNSTSHCAS NDWPTRSESH DVQYASQYRR HPFDYQSYDY RHAHSDSPQC  180
YGETSSSYRS AYSLRSQAEA SLRNPYHLPF ESVDLELRLG QRHD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-1281108229superman protein
2l1o_A4e-1281108229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.128520.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388201.11e-166zinc finger protein 10-like
TrEMBLA0A2K1JUJ41e-165A0A2K1JUJ4_PHYPA; Uncharacterized protein
STRINGPP1S11_120V6.11e-165(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.16e-22zinc-finger protein 10