PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_14690V3.1.p

Common Name

PHYPADRAFT_159296

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

ERF

Protein Properties

Length: 178aa MW: 19980.8 Da PI: 9.0711

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_14690V3.1.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.8	2.7e-13	37	82	1	48
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaia 48 ++ykG+r+++ gr+ +eIr + ++++++lg++ taeeAa+a +a Pp3c11_14690V3.1.p 37 PKYKGIRYRPELGRYISEIRPA---QpRKRKIWLGTYKTAEEAARAFDA 82 79**************9982...3567***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.8E-8	37	81	IPR001471	AP2/ERF domain
CDD	cd00018	9.49E-15	37	85	No hit	No description
SMART	SM00380	4.4E-9	38	100	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-12	38	95	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.1E-17	38	97	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	15.185	38	99	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0030018	anatomy	gametophore

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MQSSIHSGAG GHGGGHSIVC NSPLPSLSTH LHAVCIPKYK GIRYRPELGR YISEIRPAQP 60 RKRKIWLGTY KTAEEAARAF DAGIFYTKKP INYNFEDSPS ILEPLPENLT PEEEHVEIQK 120 KAKAAAARVQ ATQVMLETKP PRNYVSDMTE RFHESQMYCA KPHEPPREIQ FAVVLDR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ppa.4343	0.0	protonema

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388119.1	1e-131	ethylene-responsive transcription factor RAP2-9-like
TrEMBL	A0A2K1JUQ7	1e-129	A0A2K1JUQ7_PHYPA; Uncharacterized protein
TrEMBL	A9RIN8	1e-127	A9RIN8_PHYPA; Predicted protein
STRING	PP1S11_280V6.1	1e-130	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06746.1	2e-12	related to AP2 9

Link Out ? help Back to Top
Phytozome	Pp3c11_14690V3.1.p
Entrez Gene	5917102

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]