PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_15370V3.7.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family bHLH
Protein Properties Length: 583aa    MW: 65483.8 Da    PI: 5.975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_15370V3.7.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.2e-14389435455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N++f  Lr+++P+       K++Ka+ Le A+ YI++Lq
  Pp3c11_15370V3.7.p 389 NHVQAERQRREKLNQKFYALRSVVPNV-----SKMDKASLLEDAITYINELQ 435
                         6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.9E-4151194IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.93E-15383439No hitNo description
PROSITE profilePS5088817.352385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-19385454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-19389452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11389435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-17391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MEMSQLLNAW EVADSAMIEA FMGTGYNCVE GFEVQDDPDG QLHLNESVLL RRLHSLVEES  60
TVDWTYAIFW QLSALREGEM MLGWGDGYFR SAKENEINDA RNMKGGSQEE DQQMRRKVLR  120
ELQALVNGSE DDVSDYVTDT EWFYLVSMSH SYAAGVGTPG RALASDRPVW LIGANKAPDN  180
NCSRVQLAKM AGIQIRESWE VVQNVKMVFD EPMMWAAHEI QAVAHSLPLS SDATSMRPSS  240
PSLMSIATIS ASISNASQIG RCSNPSQDHE AHFVGRKNPP SSRPPMRFYK PRVEELSSDT  300
PETNLVDNKY IVGKSVSFHH LSKIGQRGMP GPPTTANRLP CFAPSEVDCH ESEADVSVKE  360
NVVESSTNLE PKPRKRGRKP ANDREEPLNH VQAERQRREK LNQKFYALRS VVPNVSKMDK  420
ASLLEDAITY INELQEKLQK AEAELKVFQR QVLASTGESK KPNPSRRDST ESSDEERFRL  480
QESGQRSAPL VHTSENKPVI SVFVLGEEAM IRVYCTRHSN FIVHMMSALE KLRLEVIHSN  540
TSSMKDMLLH VVIVKIDSTQ TYTQEQLGKI LERSYVPDHS AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A3e-301319413197Transcription factor MYC3
4ywc_A3e-301319413197Transcription factor MYC3
4ywc_B3e-301319413197Transcription factor MYC3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388254.10.0transcription factor MYC3-like isoform X1
RefseqXP_024388255.10.0transcription factor MYC3-like isoform X1
TrEMBLA9RIS20.0A9RIS2_PHYPA; Predicted protein
STRINGPP1S11_350V6.20.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-47bHLH family protein