PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pp3c11_16920V3.2.p

Common Name

PHYPADRAFT_79653

Organism

Physcomitrella patens

Taxonomic ID

3218

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella

Family

MYB_related

Protein Properties

Length: 149aa MW: 16944.4 Da PI: 10.1823

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pp3c11_16920V3.2.p	genome	COSMOSS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41	4.4e-13	75	116	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE +++++a k +G++ +++Ia+ +g +R+ q++ + qky Pp3c11_16920V3.2.p 75 WTNEERQRFKKALKTFGTD-FAAIAKFVG-TRSSTQVRTHAQKY 116 *****************.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.569	63	121	IPR017930	Myb domain
SMART	SM00717	2.8E-11	71	119	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.84E-12	72	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-8	73	119	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.5E-7	74	112	IPR009057	Homeodomain-like
Pfam	PF00249	4.8E-12	74	116	IPR001005	SANT/Myb domain
CDD	cd00167	1.72E-9	75	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MNQCEVILAP VSSRKVKCLI PEHYLQNMDS LGLQQLEHLE KELEQAKKKI LVLKAQEHRE 60 TSSPDTKQVS ESRYWTNEER QRFKKALKTF GTDFAAIAKF VGTRSSTQVR THAQKYYAKL 120 IRDYKRSGKA GATSMKACED ATTRHTAP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388373.1	1e-106	myb-like protein I isoform X3
TrEMBL	A9SHY2	1e-105	A9SHY2_PHYPA; Predicted protein
STRING	PP1S80_153V6.1	1e-107	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP11644	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	8e-11	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pp3c11_16920V3.2.p
Entrez Gene	5929176

Publications ? help Back to Top
Rensing SA, et al. The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Science, 2008. 319(5859): p. 64-9 [PMID:18079367]