PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c11_1840V3.1.p
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family WRKY
Protein Properties Length: 507aa    MW: 55670.8 Da    PI: 5.422
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c11_1840V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31224282260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        dDgy+WrKYGqK+vk+s++pr+YYrCt+a+Cpv+k+vers edp ++++ Yeg+H+h+k
  Pp3c11_1840V3.1.p 224 DDGYKWRKYGQKPVKSSPHPRNYYRCTTANCPVRKRVERSIEDPGLIVTSYEGTHTHPK 282
                        8********************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32208282IPR003657WRKY domain
SuperFamilySSF1182902.09E-28216282IPR003657WRKY domain
PROSITE profilePS5081130.503218283IPR003657WRKY domain
SMARTSM007743.2E-36223282IPR003657WRKY domain
PfamPF031063.5E-25224281IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MLMTDESMAL EEVRKECKET DDCSDSMNQS SREGDEPEAS LEESTDQANV WAQQLFESQY  60
LDLSGASPRG LMSPKFSEMG GFADLGTLCA SPLFSDQLKF LQSWSPKVIP NTVSAWGSGG  120
KTASTSEIVS TSEKSAESDP SSSDFMITSD STGTGSGDEA KTTRKRKSVE RDEGIDGSDG  180
DDVVKEQETS NSSSMEQGQK MKGPKRPREP RYEFKTRSEV DVIDDGYKWR KYGQKPVKSS  240
PHPRNYYRCT TANCPVRKRV ERSIEDPGLI VTSYEGTHTH PKINRPKNSS GVGWTSNEFE  300
GPQDLWSQVQ NGIPATTSGL PDLGPHQDNL AHLPNLGNLF SAWPTLPFNL AQPPPRLQDN  360
VSMIMAYQLV RLQFELQARI QQFMSYNAAQ QGLAGGLSKN PFTNNPQGLP QFPLPDLSRL  420
LQNYADLAAE PKQVPTPEPL NPSSLLSRRL NAARLRTSSL NPNTQKPNTL RNLATQQSME  480
GPQDAGPDLK RKLSGPGLPP RPSRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23215280974Probable WRKY transcription factor 4
2lex_A2e-23215280974Probable WRKY transcription factor 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167TRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.6080.0protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8896250.0DQ889625.1 Physcomitrella patens WRKY transcription factor 6 (WRKY6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024389466.10.0uncharacterized protein LOC112288935 isoform X2
TrEMBLA0A2K1JT300.0A0A2K1JT30_PHYPA; Uncharacterized protein
STRINGPP1S39_217V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.15e-34WRKY family protein